A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3379079



Internal ID19810057
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:131698901..131714200hg38UCSC Ensembl
chr6:132020041..132035340hg19UCSC Ensembl
Cytoband6q23.2
Allele length
AssemblyAllele length
hg3815300
hg1915300
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14730212, nssv14722948, nssv14718554, nssv14724432, nssv14712402, nssv14719790, nssv14728835
SamplesHG02106, HG04217, NA12878, HG02059, NA19434, HG00733, HG00514
Known GenesCTAGE9, ENPP3, OR2A4
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3379079
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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