A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3378676



Internal ID19462968
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:59133269..59133269hg38UCSC Ensembl
chr20:57708324..57708324hg19UCSC Ensembl
Cytoband20q13.32
Allele length
AssemblyAllele length
hg38195
hg19195
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14651787, nssv14638181, nssv14645207, nssv14637848, nssv14650470, nssv14639369, nssv14650106, nssv14643851, nssv14641776, nssv14635412, nssv14636034
SamplesCHM13, HG02106, CHM1, HG00268, NA12878, HG02818, HG02059, HG01352, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3378676
Frequency
Sample Size14
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


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