A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3377925



Internal ID19462217
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:102311892..102311961hg38UCSC Ensembl
chr2:102928352..102928421hg19UCSC Ensembl
Cytoband2q12.1
Allele length
AssemblyAllele length
hg3870
hg1970
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14630402, nssv14612848, nssv14618052
SamplesHG00268, HG02818, HG00733
Known GenesIL1RL1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3377925
Frequency
Sample Size14
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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