A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3377800



Internal ID19808778
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:3640875..3640875hg38UCSC Ensembl
chr2:3688465..3688465hg19UCSC Ensembl
Cytoband2p25.3
Allele length
AssemblyAllele length
hg3857
hg1957
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14621435, nssv14629987, nssv14613360, nssv14615613
SamplesHG02106, NA12878, HG02059, HG01352
Known GenesCOLEC11
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3377800
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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