A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3377326



Internal ID19461618
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:171535515..171535515hg38UCSC Ensembl
chr2:172392025..172392025hg19UCSC Ensembl
Cytoband2q31.1
Allele length
AssemblyAllele length
hg3875
hg1975
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14644683, nssv14632947, nssv14648721, nssv14649680, nssv14635042, nssv14640304, nssv14649212
SamplesHG04217, HG00268, NA12878, HG02818, NA19240, HG00733, HG00514
Known GenesCYBRD1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3377326
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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