A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3376158



Internal ID19807136
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:113979614..113979614hg38UCSC Ensembl
chr2:114737191..114737191hg19UCSC Ensembl
Cytoband2q14.1
Allele length
AssemblyAllele length
hg3874
hg1974
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14613776, nssv14620909, nssv14612677, nssv14621841, nssv14615685, nssv14614872, nssv14629498
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, HG02818, NA19434
Known GenesLOC100499194, LOC440900
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3376158
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer