A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3375377



Internal ID19806355
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr21:40022914..40039149hg38UCSC Ensembl
chr21:41394841..41411076hg19UCSC Ensembl
Cytoband21q22.2
Allele length
AssemblyAllele length
hg3816236
hg1916236
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14654897, nssv14668362, nssv14655884, nssv14660195, nssv14664326, nssv14662714, nssv14661404, nssv14665289, nssv14661668, nssv14660713, nssv14660283, nssv14654007, nssv14660938, nssv14659610
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesDSCAM
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3375377
Frequency
Sample Size14
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer