A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3371848



Internal ID19456140
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:68901..199600hg38UCSC Ensembl
chr19:68901..199600hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38130700
hg19130700
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14604016, nssv14610410, nssv14609323, nssv14595578, nssv14601583, nssv14597917, nssv14594657, nssv14592465, nssv14609686
SamplesHG04217, HG00268, NA12878, HG02818, HG02059, HG01352, NA19434, NA19240, HG00733
Known GenesFAM138A, FAM138F, LINC01002, OR4F17, WASH5P
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3371848
Frequency
Sample Size14
Observed Gain9
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer