A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3370185



Internal ID19801164
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:39101646..39101707hg38UCSC Ensembl
chr22:39497651..39497712hg19UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg3862
hg1962
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14654600, nssv14665042, nssv14655999, nssv14661380, nssv14671854, nssv14662227
SamplesCHM13, HG04217, HG00268, HG02818, HG01352, NA19240
Known GenesAPOBEC3H
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3370185
Frequency
Sample Size14
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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