A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3367861



Internal ID19798839
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:150821840..150821979hg38UCSC Ensembl
chr3:150539627..150539766hg19UCSC Ensembl
Cytoband3q25.1
Allele length
AssemblyAllele length
hg38140
hg19140
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14674578, nssv14688103, nssv14691869, nssv14688449, nssv14685668, nssv14687962, nssv14679600, nssv14689307, nssv14673948, nssv14690707, nssv14683556
SamplesCHM13, HG02106, HG04217, CHM1, NA12878, HG02818, HG02059, HG01352, NA19434, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3367861
Frequency
Sample Size14
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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