A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3364098



Internal ID19795076
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:97204262..97208004hg38UCSC Ensembl
chr2:97869999..97873741hg19UCSC Ensembl
Cytoband2q11.2
Allele length
AssemblyAllele length
hg383743
hg193743
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14620435, nssv14627746, nssv14622416
SamplesNA12878, HG01352, HG00733
Known GenesANKRD36
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3364098
Frequency
Sample Size14
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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