A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3362688



Internal ID19793666
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:44488086..44488135hg38UCSC Ensembl
chr14:80752343..80752382hg19UCSC Ensembl
Cytoband14q31.1
Allele length
AssemblyAllele length
hg3850
hg1940
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14629550, nssv14616141, nssv14615542, nssv14631104, nssv14621325, nssv14624963, nssv14630326
SamplesHG04217, NA12878, HG02818, HG02059, NA19434, NA19240, HG00514
Known GenesDIO2-AS1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3362688
Frequency
Sample Size14
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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