A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3362595



Internal ID19793573
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:16089997..16090092hg38UCSC Ensembl
chr2:16230119..16230214hg19UCSC Ensembl
Cytoband2p24.3
Allele length
AssemblyAllele length
hg3896
hg1996
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14618661, nssv14615235, nssv14623021, nssv14630191, nssv14613667, nssv14619149, nssv14629602, nssv14618771, nssv14625184, nssv14629327, nssv14618350, nssv14621689, nssv14614815, nssv14628107
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3362595
Frequency
Sample Size14
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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