A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3361966



Internal ID19792944
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:241091413..241091413hg38UCSC Ensembl
chr2:242030828..242030828hg19UCSC Ensembl
Cytoband2q37.3
Allele length
AssemblyAllele length
hg3855
hg1955
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14643779, nssv14645200, nssv14648989, nssv14644965
SamplesHG02106, HG00268, HG01352, NA19434
Known GenesMTERFD2, SNED1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3361966
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer