A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3360770



Internal ID19445062
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:53868479..53868546hg38UCSC Ensembl
chr2:54095616..54095683hg19UCSC Ensembl
Cytoband2p16.2
Allele length
AssemblyAllele length
hg3868
hg1968
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14628528, nssv14624765, nssv14621922, nssv14630810, nssv14625275, nssv14612890, nssv14620677, nssv14626128
SamplesHG02106, HG04217, HG00268, NA12878, HG02818, HX1, HG02059, HG00514
Known GenesPSME4
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3360770
Frequency
Sample Size14
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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