A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3360194



Internal ID19791172
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:50786301..50807900hg38UCSC Ensembl
chr22:51224729..51244566hg19UCSC Ensembl
Cytoband22q13.33
Allele length
AssemblyAllele length
hg3821600
hg1919838
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14652061, nssv14661428, nssv14671716, nssv14657069, nssv14653696, nssv14660044, nssv14664186, nssv14655538, nssv14659609, nssv14652513, nssv14669587, nssv14671244
SamplesCHM13, HG02106, HG04217, CHM1, NA12878, HG02818, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesRPL23AP82
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3360194
Frequency
Sample Size14
Observed Gain12
Observed Loss0
Observed Complex0
Frequencyn/a


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