A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3359908



Internal ID19790886
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:128200341..128200573hg38UCSC Ensembl
chr3:127919184..127919416hg19UCSC Ensembl
Cytoband3q21.3
Allele length
AssemblyAllele length
hg38233
hg19233
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14625891
SamplesHG01352
Known GenesEEFSEC
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3359908
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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