A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3359061



Internal ID19790039
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:115664231..115664231hg38UCSC Ensembl
chr3:115383078..115383078hg19UCSC Ensembl
Cytoband3q13.31
Allele length
AssemblyAllele length
hg38339
hg19339
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14673831, nssv14673706, nssv14691906
SamplesCHM1, HX1, HG01352
Known GenesGAP43
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3359061
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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