A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3358869



Internal ID19789847
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:83221501..83237000hg38UCSC Ensembl
chr17:81169270..81184769hg19UCSC Ensembl
Cytoband17q25.3
Allele length
AssemblyAllele length
hg3815500
hg1915500
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14593461, nssv14600282, nssv14601598
SamplesCHM1, NA12878, HG00733
Known GenesFLJ43681
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3358869
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer