A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3356369



Internal ID19787347
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:60793261..60793261hg38UCSC Ensembl
chr13:61367395..61367395hg19UCSC Ensembl
Cytoband13q21.2
Allele length
AssemblyAllele length
hg38307
hg19307
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14540242, nssv14535185, nssv14534411, nssv14547577
SamplesCHM13, HG02106, CHM1, HG00268
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3356369
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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