A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3354754



Internal ID19785732
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:89224968..89224968hg38UCSC Ensembl
chr16:89291376..89291376hg19UCSC Ensembl
Cytoband16q24.3
Allele length
AssemblyAllele length
hg38330
hg19330
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14587303, nssv14591685, nssv14583167, nssv14575367, nssv14583646, nssv14574542, nssv14590627, nssv14573863, nssv14578977, nssv14576040, nssv14578235
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, HG02818, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesZNF778
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3354754
Frequency
Sample Size14
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer