A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3353325



Internal ID19784303
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:18183401..18214100hg38UCSC Ensembl
chrUn_gl000212:12153..42852hg19UCSC Ensembl
Cytoband
Allele length
AssemblyAllele length
hg3830700
hg1930700
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14536298, nssv14539766, nssv14535175, nssv14545128, nssv14547481, nssv14550234, nssv14548833, nssv14535110, nssv14539398, nssv14533193, nssv14538040, nssv14550415, nssv14545524, nssv14536367
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3353325
Frequency
Sample Size14
Observed Gain14
Observed Loss0
Observed Complex0
Frequencyn/a


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