A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3352854



Internal ID19783832
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr14:103131984..103132043hg38UCSC Ensembl
chr14:103598321..103598380hg19UCSC Ensembl
Cytoband14q32.32
Allele length
AssemblyAllele length
hg3860
hg1960
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14560532, nssv14561124, nssv14558978, nssv14560906, nssv14562794, nssv14559419, nssv14562032, nssv14557901, nssv14560315, nssv14553054
SamplesHG02106, HG04217, CHM1, NA12878, HG02818, HG02059, HG01352, NA19434, NA19240, HG00733
Known GenesTNFAIP2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3352854
Frequency
Sample Size14
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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