A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3352714



Internal ID19437006
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:49125779..49125779hg38UCSC Ensembl
chr17:47203141..47203141hg19UCSC Ensembl
Cytoband17q21.32
Allele length
AssemblyAllele length
hg38224
hg19224
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14588906, nssv14579909, nssv14579974, nssv14578541, nssv14576145, nssv14588974, nssv14573367, nssv14582944, nssv14590915
SamplesHG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HG02059, HG01352, HG00733
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3352714
Frequency
Sample Size14
Observed Gain9
Observed Loss0
Observed Complex0
Frequencyn/a


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