A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3352643



Internal ID19783621
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:87512101..87524700hg38UCSC Ensembl
chr16:87545707..87558306hg19UCSC Ensembl
Cytoband16q24.2
Allele length
AssemblyAllele length
hg3812600
hg1912600
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14586785
SamplesCHM1
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3352643
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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