A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3352263



Internal ID19783241
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr14:49820976..49821503hg38UCSC Ensembl
chr14:50287694..50288221hg19UCSC Ensembl
Cytoband14q21.3
Allele length
AssemblyAllele length
hg38528
hg19528
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14553024, nssv14567924, nssv14552168, nssv14563776, nssv14557405, nssv14566214, nssv14553483, nssv14557731, nssv14552525, nssv14557648, nssv14566727, nssv14555215, nssv14555847, nssv14556076
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesNEMF
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3352263
Frequency
Sample Size14
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer