A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3351939



Internal ID19782917
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:15960256..15960573hg38UCSC Ensembl
chr17:15863570..15863887hg19UCSC Ensembl
Cytoband17p12
Allele length
AssemblyAllele length
hg38318
hg19318
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14554439, nssv14569852, nssv14570682, nssv14558817, nssv14569450, nssv14560830, nssv14559586, nssv14558034, nssv14559224, nssv14571727, nssv14568715
SamplesHG02106, CHM1, HG00268, NA12878, HG02818, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesADORA2B
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3351939
Frequency
Sample Size14
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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