A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3351677



Internal ID19782655
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:113625286..113625286hg38UCSC Ensembl
chr13:114279601..114279601hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38381
hg19381
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14532418, nssv14549983, nssv14537284, nssv14537512, nssv14549968, nssv14545046, nssv14545582
SamplesHG02106, HG04217, HG00268, HG02818, HG02059, HG01352, NA19434
Known GenesTFDP1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3351677
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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