A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3349041



Internal ID19780019
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:930050..930108hg38UCSC Ensembl
chr16:980050..980108hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3859
hg1959
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14556318, nssv14569819, nssv14566543, nssv14552446, nssv14552473, nssv14558568, nssv14564832, nssv14565709
SamplesCHM13, HG02106, HG00268, HG02818, HX1, HG02059, NA19434, NA19240
Known GenesLMF1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3349041
Frequency
Sample Size14
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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