A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3347941



Internal ID19778919
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:82580433..82580642hg38UCSC Ensembl
chr17:80538309..80538518hg19UCSC Ensembl
Cytoband17q25.3
Allele length
AssemblyAllele length
hg38210
hg19210
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14608778, nssv14608098, nssv14603324, nssv14596190, nssv14604842, nssv14605357, nssv14593921, nssv14599505, nssv14611037, nssv14608893
SamplesCHM13, HG02106, HG04217, NA12878, HG02818, HX1, HG02059, HG01352, NA19240, HG00733
Known GenesFOXK2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3347941
Frequency
Sample Size14
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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