A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3347859



Internal ID19778837
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:34541261..34541310hg38UCSC Ensembl
chr13:35115398..35115447hg19UCSC Ensembl
Cytoband13q13.2
Allele length
AssemblyAllele length
hg3850
hg1950
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14549927, nssv14551251, nssv14548580, nssv14545078, nssv14533112, nssv14532086
SamplesCHM13, HG02106, HG00268, NA12878, HG00733, HG00514
Known GenesLINC00457
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3347859
Frequency
Sample Size14
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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