A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3345442



Internal ID19776420
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:63501226..63501365hg38UCSC Ensembl
chr17:61578587..61578726hg19UCSC Ensembl
Cytoband17q23.3
Allele length
AssemblyAllele length
hg38140
hg19140
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14575769, nssv14586707, nssv14581253, nssv14578551, nssv14587367, nssv14580054, nssv14576132
SamplesCHM13, HG02106, HG00268, NA12878, HG02818, HX1, HG01352
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3345442
Frequency
Sample Size14
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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