A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3341349



Internal ID19772327
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:32530601..32571700hg38UCSC Ensembl
chr15:32822802..32863901hg19UCSC Ensembl
Cytoband15q13.3
Allele length
AssemblyAllele length
hg3841100
hg1941100
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14564695, nssv14558731, nssv14567250, nssv14565109, nssv14559767, nssv14568682, nssv14568807, nssv14570710, nssv14559695, nssv14562079, nssv14568165, nssv14564084
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesLOC100996255, WHAMMP1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3341349
Frequency
Sample Size14
Observed Gain12
Observed Loss0
Observed Complex0
Frequencyn/a


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