A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3337665



Internal ID19768643
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:6403565..6403565hg38UCSC Ensembl
chr12:6512731..6512731hg19UCSC Ensembl
Cytoband12p13.31
Allele length
AssemblyAllele length
hg38700
hg19700
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14529530, nssv14522649, nssv14524651, nssv14528108, nssv14526722, nssv14531367, nssv14522729, nssv14520664, nssv14524177, nssv14529785, nssv14519377, nssv14518500, nssv14523029, nssv14522258
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3337665
Frequency
Sample Size14
Observed Gain14
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer