A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3335126



Internal ID19766104
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:123476175..123476175hg38UCSC Ensembl
chr12:123960722..123960722hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg3867
hg1967
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14539078, nssv14532496, nssv14550676, nssv14545661, nssv14539262, nssv14540199, nssv14536353, nssv14536305, nssv14543918, nssv14537263, nssv14543322
SamplesCHM13, CHM1, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesRILPL1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3335126
Frequency
Sample Size14
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


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