A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3334686



Internal ID19765664
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:124840025..124840025hg38UCSC Ensembl
chr12:125324571..125324571hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg38246
hg19246
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14541960, nssv14538000, nssv14551803, nssv14547883, nssv14534952, nssv14551973, nssv14536922, nssv14540396, nssv14544173, nssv14547350, nssv14546349, nssv14537950, nssv14545370
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733
Known GenesSCARB1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3334686
Frequency
Sample Size14
Observed Gain13
Observed Loss0
Observed Complex0
Frequencyn/a


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