A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3331178



Internal ID19762156
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:130532468..130532558hg38UCSC Ensembl
chr11:130402363..130402453hg19UCSC Ensembl
Cytoband11q24.3
Allele length
AssemblyAllele length
hg3891
hg1991
Variant TypeCNV mobile element deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14808425, nssv14808412, nssv14803685, nssv14809728, nssv14803229
SamplesHG02818, HG02059, NA19434, NA19240, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a mobile element insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3331178
Frequency
Sample Size14
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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