A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3326814



Internal ID19757792
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:126417905..126418218hg38UCSC Ensembl
chr10:128106474..128106787hg19UCSC Ensembl
Cytoband10q26.2
Allele length
AssemblyAllele length
hg38314
hg19314
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14511186, nssv14500809, nssv14495027, nssv14507256, nssv14497211, nssv14505311, nssv14500166, nssv14504609, nssv14503283, nssv14497041, nssv14496591
SamplesCHM13, HG02106, CHM1, HG00268, NA12878, HG02818, HX1, NA19434, NA19240, HG00733, HG00514
Known GenesLINC00601
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3326814
Frequency
Sample Size14
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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