A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3326092



Internal ID19757070
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:112440037..112440126hg38UCSC Ensembl
chr10:114199795..114199884hg19UCSC Ensembl
Cytoband10q25.2
Allele length
AssemblyAllele length
hg3890
hg1990
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14498590, nssv14506362, nssv14496472, nssv14507133, nssv14505281, nssv14511715, nssv14499134, nssv14503376
SamplesHG02106, HG04217, CHM1, NA12878, HG02059, HG01352, HG00733, HG00514
Known GenesZDHHC6
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3326092
Frequency
Sample Size14
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer