A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3325398



Internal ID19756376
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:54876657..54877696hg38UCSC Ensembl
chr1:55342330..55343369hg19UCSC Ensembl
Cytoband1p32.3
Allele length
AssemblyAllele length
hg381040
hg191040
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14488829, nssv14489439, nssv14476499
SamplesHG04217, HX1, HG02059
Known GenesDHCR24
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3325398
Frequency
Sample Size14
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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