A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3324284



Internal ID19755263
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:31431950..31431950hg38UCSC Ensembl
chr1:31904797..31904797hg19UCSC Ensembl
Cytoband1p35.2
Allele length
AssemblyAllele length
hg38315
hg19315
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14475355, nssv14478337, nssv14480901, nssv14480688, nssv14480090, nssv14485089, nssv14479175
SamplesCHM13, HG02106, HG00268, HG02818, HG02059, HG01352, NA19240
Known GenesSERINC2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3324284
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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