A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3323355



Internal ID19407647
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:28571787..28571787hg38UCSC Ensembl
chr1:28898299..28898299hg19UCSC Ensembl
Cytoband1p35.3
Allele length
AssemblyAllele length
hg38338
hg19338
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14490063, nssv14473673, nssv14475438
SamplesCHM1, HG02818, HG00514
Known GenesTRNAU1AP
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3323355
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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