A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3322128



Internal ID19753106
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:227492580..227508781hg38UCSC Ensembl
chr1:227680281..227696482hg19UCSC Ensembl
Cytoband1q42.13
Allele length
AssemblyAllele length
hg3816202
hg1916202
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14483217, nssv14480316, nssv14477180
SamplesHG02106, CHM1, HG02818
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3322128
Frequency
Sample Size14
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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