A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3321207



Internal ID19752185
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:180875..180875hg38UCSC Ensembl
chr5:11544..11544hg19UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg3850
hg1950
Variant TypeCNV mobile element insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14477177, nssv14472554
SamplesNA12878, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3321207
Frequency
Sample Size14
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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