A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3320412



Internal ID19751390
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:149627701..149642800hg38UCSC Ensembl
chr1:149596866..149611959hg19UCSC Ensembl
Cytoband1q21.2
Allele length
AssemblyAllele length
hg3815100
hg1915094
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14481243, nssv14484955, nssv14474004, nssv14482869
SamplesHG02106, HG02818, HG01352, HG00733
Known GenesLINC00623, LINC00869
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3320412
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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