A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3320398



Internal ID19751376
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:149043362..149043431hg38UCSC Ensembl
chr1:144841013..144841082hg19UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg3870
hg1970
Variant TypeCNV line1 deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14749761
SamplesHG01352
Known GenesLOC100288142, NBPF9
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a L1 insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3320398
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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