A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3320106



Internal ID19404396
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:145097001..145117400hg38UCSC Ensembl
chr1:143891744..143912142hg19UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg3820400
hg1920399
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14491411, nssv14478469, nssv14476610, nssv14491677, nssv14475170, nssv14485246, nssv14482300, nssv14491342, nssv14477354
SamplesHG04217, CHM1, NA12878, HG02818, HG02059, HG01352, NA19240, HG00733, HG00514
Known GenesFAM72D
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3320106
Frequency
Sample Size14
Observed Gain9
Observed Loss0
Observed Complex0
Frequencyn/a


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