A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3319883



Internal ID19750861
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:145253901..145282100hg38UCSC Ensembl
chr1:144376455..144501624hg19UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg3828200
hg19125170
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14487021, nssv14489298, nssv14486042, nssv14476263, nssv14490753, nssv14473579, nssv14486893, nssv14486436, nssv14487102, nssv14474922, nssv14474133, nssv14472390, nssv14484914, nssv14480045
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesLOC100288142, LOC728875
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3319883
Frequency
Sample Size14
Observed Gain14
Observed Loss0
Observed Complex0
Frequencyn/a


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