A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3288228



Internal ID22386640
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:68397517..68397583hg38UCSC Ensembl
chr15:68689856..68689922hg19UCSC Ensembl
Cytoband15q23
Allele length
AssemblyAllele length
hg3867
hg1967
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14430496, nssv14405335
SamplesNA19240, HG00514
Known GenesITGA11
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsSequences at least 70% masked by tandem repeat finder or contained within a tandem repeat
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3288228
Frequency
Sample Size9
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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