A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3277840



Internal ID22377875
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:177560125..177560252hg38UCSC Ensembl
chr5:176987126..176987253hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38128
hg19128
Variant TypeCNV sva deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14435632
SamplesHG00514
Known Genes
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a SVA mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3277840
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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